2023
Zhong, V.*, Archibald, B.N.*, Brophy, J.A.N.
Transcriptional and post-transcriptional controls for tuning gene expression in plants
Current Opinion in Plant Biology 71; 102315
Leak, L.B.*, Tamborski, J.*, Commissaris, A., Brophy, J.A.N.
Forging a path toward a more sustainable laboratory
Trends in Biochemical Sciences 48(1): 5-8
2022
Brophy, J.A.N., Magallon, K. J., Duan, L., Zhong, V., Ramachandran, P., Kniazev, K., Dinneny, J.R.
Synthetic genetic circuits as a means of reprogramming of plant roots
Science 377(6607): 747-751
News Articles & Perspectives: Science, Stanford News, GEN, Synthetic Biology, DOE
Rice, S.L., Lazarus, E., Anderton, E., Birnbaum, K., Brophy, J.A.N., Cole, B., Dickel, D., Erhardt, D., Fahlgren, N., Frank, M., Haswell, E., Huang, S.C., Leiboff, S., Libault, M., Otegui, M.S., Provart, N., Uhrig, R.G., Rhee, S.Y., Plant Cell Atlas Consortium
First Plant Cell Atlas symposium report
Plant Direct 6:e406
Brophy, J.A.N.
Toward synthetic plant development
Plant Physiology 188(2): 738-748
2021
Becker, M.H., Brophy, J.A.N., Barrett, K., Bronikowski, E., Evans, M., Glassey, E., Klocke, B., Lassiter, E., Meyer, A.J., Kaganer, A.E., Muletz-Wolz, C.R., Fleischer, R.C., Voigt, C.A., Gratwicke, B.
ISME Communications 1: 57
Jha, S.G., Borowsky, A.T., Cole, B.J., Fahlgren, N., Farmer, A., Huang, C., Karia, P., Libault, M., Provart, N.J., Rice, S.L., Saura-Sanchez, M., Agarwal, P., Ahkami, A.H., Anderton, C.R., Briggs, S.P., Brophy, J.A.N., Denolf, P., Di Costanzo, L.F., Exposito-Alonso, M., Giacomello, S., Gomez-Cano, F., Kaufmann, K., Ko, D.K., Kumar, S., Malkovskivy, A.V., Nakayama, N., Obata, T., Otegui, M.S., Palfalvi, G., Quezada-Rodriguez, E.H., Singh, R., Uhrig, R.G., Waese, J., Van Wijk, K., Wright, R.C., Ehrhardt, D.W., Birnbaum, K.D., Rhee, S.Y., Plant Cell Atlas Consortium
Science Forum: Vision, challenges and opportunities for a Plant Cell Atlas
eLife e66877
Cuevas-Velazquez, C.L., Vellosillo, T., Guadalupe, K., Schmidt, H.B., Yu, F., Moses, D., Brophy, J.A.N., Cosio-Acosta, D., Das, A., Wang, L., Jones, A.M., Covarrubias, A.A., Sukenik, S., Dinneny, J.R.
Nature Communications 12: 5438
2018
Brophy, J.A.N., Triassi, A.J., Adams, B.L., Renberg, R.L., Stratis-Cullum, D.N., Grossman, A.D., & Voigt, C.A.
Nature Microbiology 3(9) 1043-1053
Brophy, J.A.N.*, LaRue T.*, & Dinneny, J.R.
Understanding and engineering plant form
Seminars in Cell & Developmental Biology 79, 68-77
2016
Brophy, J.A.N. & Voigt, C.A.
Antisense transcription as a tool to tune gene expression
Molecular Systems Biology 12(1) 854
2014
Brophy, J.A.N. & Voigt, C.A.
Principles of genetic circuit design
Nature Methods 11(5) 508-520
2013
Chen, Y-J., Liu, P., Nielsen, A.A.K., Brophy, J.A.N., Clancy, K., Peterson, T., & Voigt, C.A.
Nature Methods 10(7) 659-664
Leguia, M., Brophy, J.A.N., Densmore, D., Asante, A., Anderson, J.C.
2ab assembly: a methodology for automatable, high-throughput assembly of standard biological parts
Journal of Biological Engineering 7(1): 1-16
2011
Leguia, M., Brophy, J.A.N., Densmore, D., & Anderson, J.C.
Automated assembly of standard biological parts
Methods in Enzymology 498, 363-397
2010
Fu, D., Brophy, J.A.N., Chan, C.T.Y., Atmore, K.A., Begley, U., Paules, R.S., Dedon, P.C., Begley, T.J., & Samson, L.D.
Molecular and Cellular Biology 30(10), 2449-2459